Basic Information
VIS ID
TVIS30013098
Fusion event
HIV-WDR82 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
52296686/52262670 (Hg38)
End
52296686/52262670 (Hg38)
Orient
-
Location type
Intronic
Target gene
WDR82
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-30a-3p ; hsa-mir-92b-3p ; hsa-mir-17-5p ; hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-1207-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3910 ; hsa-mir-4302 ; hsa-mir-4711-5p ; hsa-mir-4747-5p ; hsa-mir-4763-3p ; hsa-mir-5094 ; hsa-mir-5196-5p ; hsa-mir-541-3p ; hsa-mir-605-3p ; hsa-mir-654-5p ; hsa-mir-6721-5p ; hsa-mir-6733-3p ; hsa-mir-6879-5p ; hsa-mir-9500 ; hsa-mir-129-5p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-3672 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-6864-3p ; hsa-mir-6885-3p ; hsa-mir-744-3p ; hsa-mir-8055
Nearest miRNA
hsa-mir-12127/Upstream/1587507; hsa-let-7g/Downstream/5608;
Nearest TSS
ENST00000440867/Upstream/13709; ENST00000473583/Downstream/5468;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/16546, chr3-CpG: 97/Downstream/15383
Upstream sequence
tgaatctgagtttctaactagcccccaggtgatgggtgaggctgctgttttgggcaccacacctagagaaccacAAGCCTATGCTAACAGCAACTGTATT
Downstream sequence
CCTTTTTTGGTTCCCTTTTGTGGTTATACCATCAAGAGACACTCACTGAAAAACATTTTCTTCCAATGTAACTCAACTAACATCTGCACCAGCTCCTCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate