VISDB Viral Integration Site DataBase

VIS ID

TVIS30013101

Fusion event

HIV-PHF7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p21.1

Reference genome

Start

End

52452365/52418349 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-574-5p ; hsa-mir-675-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-6760-3p ; hsa-mir-586 ; hsa-mir-3152-3p ; hsa-mir-4440 ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-5011-3p ; hsa-mir-7977 ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-4284 ; hsa-mir-338-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-642a-5p ; hsa-mir-196a-3p ; hsa-mir-873-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4469 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-759 ; hsa-mir-3613-3p ; hsa-mir-5586-3p ; hsa-mir-4797-5p ; hsa-mir-661 ; hsa-mir-939-3p ; hsa-mir-4485-5p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-1247-3p ; hsa-mir-1255b-2-3p ; hsa-mir-1273e ; hsa-mir-25-5p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-508-3p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-6807-5p

Nearest miRNA

hsa-let-7g/Upstream/124041; hsa-mir-12124/Downstream/428114;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/7261, chr3-CpG: 23/Downstream/26159

Upstream sequence

GGGCTTAGTTATAATTTTGATGTATTTACAAGCATATACATTTTTTACATAAAAATTAAACATTATACAGAGTGCTTTGTATCTTGGCTTTTTTCCATCA

Downstream sequence

TATATATTTTGGAAATCTTTCTGTATAGAACATATAGATATAGTTTtttctttttagtagctaatttattaaatcaatacatgcttattgcagaaaacat