Basic Information
VIS ID
TVIS30013108
Fusion event
HIV-DENND6A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
57661204/57675477 (Hg38)
End
57661204/57675477 (Hg38)
Orient
-
Location type
Intronic
Target gene
DENND6A
miRNAs that regulate target gene
hsa-mir-210-3p ; hsa-mir-124-3p ; hsa-mir-92a-3p ; hsa-mir-218-5p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-4529-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-8058 ; hsa-mir-5009-5p ; hsa-mir-1269b ; hsa-mir-1269a ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-432-5p ; hsa-mir-3663-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-483-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-2276-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-3065-3p ; hsa-mir-330-3p ; hsa-mir-424-5p ; hsa-mir-4686 ; hsa-mir-4772-3p ; hsa-mir-497-5p ; hsa-mir-6838-5p
Nearest miRNA
hsa-let-7g/Upstream/1822883; hsa-mir-12124/Downstream/2942328;
Nearest TSS
ENST00000440867/Upstream/9283; ENST00000465933/Downstream/17367;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/77593, chr3-CpG: 75/Downstream/17135
Upstream sequence
TTCAGCTGGCGTCTACTTCAGTAAATAATATTTTTCAACTGACTCCAACAAGTAATACACATCCTAACTACTTAGTTATTAGTAAAAGAAAAATGAAACG
Downstream sequence
GAAAAATAATTATCTGCAGTTTAAGAAACCTCAAGGACCATCTCCACAATAAAGGCTATCCTAATTCTCTCTGGTCCCTTTAAAGGATCATTATGCATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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