Basic Information
VIS ID
TVIS30013123
Fusion event
HIV-LOC105377161 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
72736085/72686934 (Hg38)
End
72736085/72686934 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377161
Nearest miRNA
hsa-let-7g/Upstream/1144845; hsa-mir-12124/Downstream/2527542;
Nearest TSS
ENST00000440867/Upstream/136382; ENST00000498315/Downstream/108656;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/31475, chr3-CpG: 28/Downstream/51987
Nearby gene
SHQ1(No orient, 62343)
Upstream sequence
ccagctagctgggtggccttgggcagtcatggcctcctctcctcaactgtccccacctttcaaaCTGTTTCCAAAGCCCTTCAGCCTTTGGAAACAGAAA
Downstream sequence
GGAGATCTTCAGGGGCCTATGGAACCCTGCACACACATCTACCCCCACCTCCCAACTTCAGATAGAGCAGCACCACTTTTTAACATTTTACAAGTTGGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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