Basic Information
VIS ID
TVIS30013124
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
74060149/74010998 (Hg38)
End
74060149/74010998 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/2468909; hsa-mir-12124/Downstream/1203478;
Nearest TSS
ENST00000440867/Upstream/11193; ENST00000608707/Downstream/256541;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/385774, chr3-CpG: 86/Downstream/603357
Nearby gene
CNTN3(No orient, 251571)
Upstream sequence
CATTAACAACCTACCTTAACTTGGGTTTTTCAGTTGGCTAGTATGCAGTGTCCACAGATAGCTAAGAAGAATCTCTGAAATAAGACACAGACAGATCTAT
Downstream sequence
ATTACTAAAGGACATCAGGATTCAGGAGAAAAGGAGACCCAGGCTCATATCAGGGTGTTTAGAAGCATGTGGAAATTCAGGTGAACAAGATTTGTAGCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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