Basic Information
VIS ID
TVIS30013127
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
84540444/84491293 (Hg38)
End
84540444/84491293 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7g/Upstream/4983324; hsa-mir-12124/Downstream/894417;
Nearest TSS
ENST00000440867/Upstream/2505141; ENST00000488348/Downstream/378282;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1683200, chr3-CpG: 48/Downstream/467840
Upstream sequence
ctccttgagcccaggcttgtatcagttctattgagtgccaccattttcatatgggagTCTGTACTGAGGATACCTGTGGAACAAACTGTTTataagtatc
Downstream sequence
ctcagtacagactcctagacagccatcctacactactgggatatccactttgggagctcccccatGTGAAAATGGTCACAAATATGGACCATGTCCAGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate