Basic Information
VIS ID
TVIS30013131
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
95755984/96037140 (Hg38)
End
95755984/96037140 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/8810863; hsa-mir-12124/Downstream/322824;
Nearest TSS
ENST00000440867/Upstream/1074210; ENST00000506569/Downstream/581096;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1098825, chr3-CpG: 49/Downstream/739633
Nearby gene
MIR8060(No orient, 322824)
Upstream sequence
ctcaaataattggtctatttcatcaacattatcaaatttgtgtgcagaaaagttatttatagtatttattggttatccttttaatattcataagatctat
Downstream sequence
agtgatgtccctcttttatttttgatattaaaaattgtgtcctttcttttttatcttagttagcctgcttagagacttattgattttgttaatcttttcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate