Basic Information
VIS ID
TVIS30013133
Fusion event
HIV-GABRR3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
97731556/98012712 (Hg38)
End
97731556/98012712 (Hg38)
Orient
+
Location type
Intronic
Target gene
GABRR3
Nearest miRNA
hsa-let-7g/Upstream/1652673; hsa-mir-12124/Downstream/1951602;
Nearest TSS
ENST00000440867/Upstream/40255; ENST00000358642/Downstream/22277;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/40147, chr3-CpG: 57/Downstream/509853
Upstream sequence
TTCAGGATGACCACTCAACACTGTTAGTCCCAGGACTCATTCCTATGGTGTTAATGACTTTTAAGTGAATGGTTAATATTGTAGTTTCaagtagatctag
Downstream sequence
gatgaagctaaggaggttatgctttgagcttctccttcacatggagcctagtgaacgttgagaatttctgggagttataatagaatattcaagttgggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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