Basic Information
VIS ID
TVIS30013136
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
101858307/102139463 (Hg38)
End
101858307/102139463 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/2175065; hsa-mir-12124/Downstream/1384570;
Nearest TSS
ENST00000440867/Upstream/40219; ENST00000478083/Downstream/36220;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/289261, chr3-CpG: 32/Downstream/3214222
Nearby gene
LINC02085(No orient, 141537)
Upstream sequence
ttgtgctggctgctggaaatacagtggtgaccaaTTTTGATATATTTTAGCAAACTGATCTCCAGAAGGTTATAAAATAAGCTCAAAATTActttgtaat
Downstream sequence
ttgaaaacttcataaccattctttttgtcagacaaattactgataaaaatatttagcaagagaaggtcaatgacaagattttgggataaactagtagatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate