Basic Information
VIS ID
TVIS30013147
Fusion event
HIV-ANAPC13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
134201302/134482460 (Hg38)
End
134201302/134482460 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANAPC13
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-324-5p ; hsa-mir-3180-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-338-3p ; hsa-mir-6838-5p ; hsa-mir-4530 ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-4773 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428
Nearest miRNA
hsa-let-7g/Upstream/44554; hsa-mir-1224/Downstream/17083416;
Nearest TSS
ENST00000440867/Upstream/106981; ENST00000514412/Downstream/793;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/75431, chr3-CpG: 88/Downstream/3218
Upstream sequence
TCTGAATATTTTCCAGGGAACCTAAGATAGGTGTATGCTCCAAGAATGTAAGTTTCTAAAAATGCTGAAAGACTGATGAGCCACAGGCAGGGAAGTAAGA
Downstream sequence
AACAGAGCTCATATGCTGCTGCTTCTTGTTCTTCCCCATCTTGCGCATTAAACTCTCATTATTTGGTTTCTCTGGTTTTCGTGTGGTGGACAGAACATGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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