Basic Information
VIS ID
TVIS30013148
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
135042847/135324005 (Hg38)
End
135042847/135324005 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/886099; hsa-mir-1224/Downstream/16241871;
Nearest TSS
ENST00000440867/Upstream/191213; ENST00000447251/Downstream/641668;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/526867, chr3-CpG: 47/Downstream/642059
Nearby gene
EPHB1(No orient, 63540)
Upstream sequence
AGGCAACTGGCCAGGGCACCTATGAGACAGAGGAACTGATGGTCCTGCTCCCATGACCCGGTATGGGCTAAGTCCCGAGGTTGGGGAGAAGAAACCACCG
Downstream sequence
CTACTTAGATTTTGGACATGAGAGCAGGGGACAAGATCTGTCAATGCTCACATTTATTTCAAACTTTATTTTGCTCATTGTAGCACAGGAAGTCATCTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate