Basic Information
VIS ID
TVIS30013152
Fusion event
HIV-RASA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
GRCh37/hg19
Start
141238093/141519251 (Hg38)
End
141238093/141519251 (Hg38)
Orient
+
Location type
Intronic
Target gene
RASA2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-182-5p ; hsa-mir-203a-3p ; hsa-mir-4470 ; hsa-mir-3973 ; hsa-mir-4635 ; hsa-mir-548l
Nearest miRNA
hsa-let-7g/Upstream/7081345; hsa-mir-1224/Downstream/10046625;
Nearest TSS
ENST00000440867/Upstream/32167; ENST00000505833/Downstream/59273;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/31333, chr3-CpG: 56/Downstream/140625
Upstream sequence
attgcccctctgccccacagagtatcatactaatatggacgacataaatgttgtactaatttacatttcctcaaagatgtcatgggcataaccattttac
Downstream sequence
caccccctggccattcttgcatattatcattgaaaaaaatttgccaatatgataggtgaaaaataacacattattattttaatgtgtgttttctgatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate