Basic Information
VIS ID
TVIS30013156
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
145222886/145505099 (Hg38)
End
145222886/145505099 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/11067193; hsa-mir-1224/Downstream/6060777;
Nearest TSS
ENST00000440867/Upstream/1531491; ENST00000482351/Downstream/434813;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1531662, chr3-CpG: 97/Downstream/655544
Nearby gene
PLOD2(No orient, 564342)
Upstream sequence
gagagaggtttaattgactcacagttctgcatggctggggaggcctcaggaaacttacaatcatggtggaaggggaagcagaaggcacttacaaaaccat
Downstream sequence
cagatctcgagagaactcactcactaacaagagatcagcatgggggaaaactggcgccatgatccaatcacctccttctctcaacacgtgggtattgcag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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