Basic Information
VIS ID
TVIS30013163
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
161038283/161320495 (Hg38)
End
161038283/161320495 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/915670; hsa-mir-1224/Downstream/2850976;
Nearest TSS
ENST00000440867/Upstream/95565; ENST00000602890/Downstream/25828;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/98789, chr3-CpG: 77/Downstream/51343
Nearby gene
SPTSSB(No orient, 24297)
Upstream sequence
gttttaatggtggtggccacaagggtgcctgtgacatgtcacctccagttccaagtggatcagaacagagagagacccagtgtctttgggagaaagtaag
Downstream sequence
agaaaagagcaagagtctctgcctgatgatccagaaaattattctggatcttttctaagaccagcaagttggtacctcgacaaatctgcaagaaccacag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate