Basic Information
VIS ID
TVIS30013166
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
172216866/172499076 (Hg38)
End
172216866/172499076 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1392317; hsa-mir-1224/Downstream/2870464;
Nearest TSS
ENST00000440867/Upstream/50620; ENST00000366254/Downstream/24234;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/49000, chr3-CpG: 39/Downstream/211550
Nearby gene
TNFSF10(No orient, 6432)
Upstream sequence
CGAAATGTCTACATGTAGTTCTAACATGAATTTCAATGGTATGTGGGATGTAATTTGAGAATTTTCTCAGAATATGTTTTGTTTAAACTGCTGAACTGAG
Downstream sequence
TTTTGTAGAGGCAAATTAACTTTTTCACTTCTAAACTTTGTTTGAAAAATGATTTTTTCTTGTTTTTCTTCTTTTACtttttatttatttattttttgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate