Basic Information
VIS ID
TVIS30013167
Fusion event
HIV-NAALADL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
174264668/174546878 (Hg38)
End
174264668/174546878 (Hg38)
Orient
+
Location type
Intronic
Target gene
NAALADL2
Nearest miRNA
hsa-let-7g/Upstream/3440119; hsa-mir-1224/Downstream/822662;
Nearest TSS
ENST00000440867/Upstream/105891; ENST00000485853/Downstream/312402;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/105320, chr3-CpG: 133/Downstream/2649571
Nearby gene
NLGN1(No orient, 263529)
Upstream sequence
tctggagtagctgagactacaggtgtgtgccaacacacctggcaaatttttaaattttttgttgagatggggtttcactatgttgtctaggttggtttAC
Downstream sequence
AGGTATGTAAATCTCTTGAATATTGtatcttgtttcctgttctctttgccttcatgtgtagtactttttttgaaatttcccagttcttattttagttgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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