Basic Information
VIS ID
TVIS30013168
Fusion event
HIV-NAALADL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
175316388/175598600 (Hg38)
End
175316388/175598600 (Hg38)
Orient
+
Location type
Intronic
Target gene
NAALADL2
Nearest miRNA
hsa-let-7g/Upstream/228979; hsa-mir-1224/Downstream/916503;
Nearest TSS
ENST00000440867/Upstream/327504; ENST00000617758/Downstream/177733;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1157042, chr3-CpG: 133/Downstream/1597849
Upstream sequence
gtttcatataataaccagagctctgctatttaggtaaagattattgtcaccattttatggatgataagactaagacagtcatattaagtgacAGATCTGG
Downstream sequence
GATAACTATTATGACTCAAAGTATTGAAGTTTCCCCGCTATCTCATAGGTCTTCAAATGTTAAAGCACAACTCCAGCTGCAATAGCCAATTGCTATTCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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