Basic Information
VIS ID
TVIS30013170
Fusion event
HIV-KCNMB2-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.32
Reference genome
GRCh37/hg19
Start
178383772/178665984 (Hg38)
End
178383772/178665984 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
KCNMB2-AS1
Nearest miRNA
hsa-let-7g/Upstream/2150833; hsa-mir-1224/Downstream/5220816;
Nearest TSS
ENST00000440867/Upstream/107099; ENST00000436247/Downstream/135952;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1467918, chr3-CpG: 63/Downstream/405533
Upstream sequence
CAACTTTTCATCAGCACAAATCCTGCCAAGTGGGGTTGTCCAAGAATAGCATCCCCGTTAAGCCTTTCTATTACGCCTCCAGCTAATGCTGATAAGTATG
Downstream sequence
TATGATGTGGCTTTACTGGTCACATGAGGCAACTTTGGAGGCCTCTACACTTTAGCTCTACTTGTCTATTCAATGTAGATGTGTGTGTGTCATTGGAGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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