Basic Information
VIS ID
TVIS30013172
Fusion event
HIV-ETV5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q27.2
Reference genome
GRCh37/hg19
Start
185787454/186069665 (Hg38)
End
185787454/186069665 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
ETV5
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-7150 ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-5689 ; hsa-mir-1539 ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-200b-3p
Nearest miRNA
hsa-let-7g/Upstream/301761; hsa-mir-1248/Downstream/717007;
Nearest TSS
ENST00000440867/Upstream/3695; ENST00000453370/Downstream/9440;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/131424, chr3-CpG: 126/Downstream/38008
Upstream sequence
cccaggctggagtgcagtgactcgagtgactcgatctcagctcaccgcaacctccgcctcccgggatcaagtggttctcctgccgcagcctcccaagtag
Downstream sequence
ctgcgatttttagtagaaacggggtttcaccatgttggccaggctggtcttgaactccaggactcagtgatctgcctgtttcagcctctcaaaagtttgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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