VISDB Viral Integration Site DataBase

VIS ID

TVIS30013177

Fusion event

HIV-FBXO45 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q29

Reference genome

Start

End

196304651/196577780 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-769-5p ; hsa-mir-92a-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-485-5p ; hsa-mir-6884-5p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-665 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-513b-5p ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-3165 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-7162-3p ; hsa-mir-383-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-624-3p ; hsa-mir-3974

Nearest miRNA

hsa-let-7g/Upstream/695385; hsa-mir-4797/Downstream/716098;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/8361, chr3-CpG: 44/Downstream/54550

Upstream sequence

CAAGGTTATGTGGCATTGCTGGGCAGTGATGACCAGAGCTGGGGCTGGAATCTGGTGGACAATAATCTACTACATAATGGAGAAGTCAATGGCAGTTTTC

Downstream sequence

CACAGTGCAACAACGCACCAAAATATCAGGTGAGAAACTGGGGTTTTTCTCAAGTATGGGCCTTTGTCAAATCACGCCTTAATTTGTTTTAAATTTACAA