VISDB Viral Integration Site DataBase

VIS ID

TVIS30013181

Fusion event

HIV-LRCH3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q29

Reference genome

Start

End

197522991/197796120 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-320a ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-7156-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-3137 ; hsa-mir-1304-3p ; hsa-mir-1208 ; hsa-mir-1183 ; hsa-mir-3664-5p ; hsa-mir-3065-3p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-6865-3p ; hsa-mir-6871-3p ; hsa-mir-6089 ; hsa-mir-3615 ; hsa-mir-3917 ; hsa-mir-4639-3p ; hsa-mir-383-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4476 ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-500b-3p ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-6876-5p

Nearest miRNA

hsa-let-7g/Upstream/121544;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/4209, chr3-CpG: 51/Downstream/163928

Upstream sequence

TAATACAGTGAAACTACCCGTGATGATATTGTGGTGAGACAAATTTGGTCAAAATAAATTATTGGATTAGAGAATATAAGAGCTGCCTTTCGTATATGAG

Downstream sequence

GAAGCTAGATAGCCAATAGCTTTAGAGGTCAGcattcattcaacagacatttattgactaaaggacttcggcagttattggtgtatgaagaggaccaaga