Basic Information
VIS ID
TVIS30013187
Fusion event
HIV-TMED11P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
1109980/1116192 (Hg38)
End
1109980/1116192 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
TMED11P
Nearest miRNA
hsa-mir-571/Upstream/765940; hsa-mir-12113/Downstream/870192;
Nearest TSS
ENST00000502981/Upstream/2553; ENST00000510332/Downstream/16117;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2252, chr4-CpG: 131/Downstream/28018
Upstream sequence
CCGACAGAGTGAAGAAAAATTGCTCTCTCTAGTCCCTGTGAATCCACACCGTTCTACCTCAGAGAGAAAGTGAGGAACAGGCAGTTCACTCTTTCCTTGG
Downstream sequence
TCCAGGGGCTTTGTGTTGAGAAATGCGTTGCTGGTAGCAAGAGATAAAATAAGTTGAATAGGCAGACTGACCCTTTGATAGTTTTGTTCTTTGACTATTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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