Basic Information
VIS ID
TVIS30013191
Fusion event
HIV-POLN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
2213749/2212022 (Hg38)
End
2213749/2212022 (Hg38)
Orient
+
Location type
Intronic
Target gene
POLN
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-571/Upstream/225545; hsa-mir-12113/Downstream/38055;
Nearest TSS
ENST00000502981/Upstream/3911; ENST00000510632/Downstream/17209;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/147351, chr4-CpG: 71/Downstream/29502
Upstream sequence
GATACAATTTCCATTCATTTACAGAGGGAAGAAGAGAAGAGTCCCTTCTCTGTGGAAGATGCCTCTTCCCTCCACTCCAAGGGCAGATAATCATCCTATG
Downstream sequence
AACCCAGGGGCAAATAATCATCCCATCAACCCAAGAGACAGGTCCTATTATCTCACTTTACTATAGGGCATTTAGGTTTAAATTTAATTAGgttgggagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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