VISDB Viral Integration Site DataBase

VIS ID

TVIS30013192

Fusion event

HIV-RNF4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

p16.3

Reference genome

Start

End

2473028/2471301 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-361-5p ; hsa-mir-221-3p ; hsa-mir-769-3p ; hsa-mir-18b-5p ; hsa-mir-151a-3p ; hsa-mir-222-3p ; hsa-mir-19a-3p ; hsa-mir-18a-5p ; hsa-mir-93-3p ; hsa-mir-548n ; hsa-mir-4296 ; hsa-mir-4322 ; hsa-mir-4265 ; hsa-mir-3620-5p ; hsa-mir-4417 ; hsa-mir-1587 ; hsa-mir-6762-3p ; hsa-mir-6829-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-218-5p ; hsa-mir-6759-5p ; hsa-mir-6796-5p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-4656 ; hsa-mir-581 ; hsa-mir-137 ; hsa-mir-187-5p ; hsa-mir-302c-3p ; hsa-mir-4473 ; hsa-mir-512-3p ; hsa-mir-520f-3p ; hsa-mir-548v ; hsa-mir-633

Nearest miRNA

hsa-mir-4800/Upstream/221145; hsa-mir-12113/Downstream/3451974;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/1300, chr4-CpG: 272/Downstream/64070

Upstream sequence

agtgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccaccatgcccagccccaaaccttttcattgttacatctgttatagtgac

Downstream sequence

ctgtgatcaatgttttgggttaccatgaatagcactcatataagacagtgaacttaattggtaaaagttgggtgtgtactaacagctccactgactggca