Basic Information
VIS ID
TVIS30013196
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
9676465/9674841 (Hg38)
End
9676465/9674841 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4A
Nearest miRNA
hsa-mir-378d-1/Upstream/118525; hsa-mir-12113/Downstream/403770;
Nearest TSS
ENST00000502981/Upstream/230307; ENST00000304374/Downstream/106839;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/141940, chr4-CpG: 21/Downstream/16917
Nearby gene
DRD5(No orient, 106793)
Upstream sequence
AGGCAGAAGCCAGAGGAAATAATCCTTGTCCCAATGCACCTGAGCATGCCACCTCACTACATGCTCTTTCTCCCTCTCCAGGAAAAATCAAGCTTGTTGA
Downstream sequence
ATACTTACCAATATGCCCACATGcatttagtccccataaccacttcttggggcagcattaccatccccaagttacagacaaggaaactgaggagagcatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate