Basic Information
VIS ID
TVIS30013197
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
10181041/10179417 (Hg38)
End
10181041/10179417 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4A
Nearest miRNA
hsa-mir-3138/Upstream/100725; hsa-mir-12113/Downstream/1189410;
Nearest TSS
ENST00000502981/Upstream/62468; ENST00000505494/Downstream/277759;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/33710, chr4-CpG: 161/Downstream/277088
Nearby gene
WDR1(No orient, 62468)
Upstream sequence
GTGGCAAAACTCACTGGATTTCTCCTTAACTTCTATGCTCTTCGTTGTCTGACACTTGCACTGCCCCAATATGATCTGTAGGAATATTTGAGTATCCAAA
Downstream sequence
AAGATCTTTAAGGTATCAAGTCACCTACTCTCACATGTACAGAAGATGTGCCAGATGCCAGTCTTCAATTCTTGTTTAAATTGGTCTTTCGGAACTCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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