Basic Information
VIS ID
TVIS30013198
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
13326341/13324717 (Hg38)
End
13326341/13324717 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/1541469; hsa-mir-12115/Downstream/303148;
Nearest TSS
ENST00000502981/Upstream/376047; ENST00000510907/Downstream/56877;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1895085, chr4-CpG: 97/Downstream/159181
Nearby gene
RAB28(No orient, 43006)
Upstream sequence
ATACTGTCAAGCTTTGCCACCCAGGTTCCCACCTGTTCATCTGTCAATGTATCCTGCCCTCTGTTTCTTCCCTAAGCACATGGCTTATCAAGTTATTTTC
Downstream sequence
CAGATCTGAAATTTTGACCAGTCCTTCATTGTCTTCAGAATAAATCTGATTCTTCTTATGACATTTGTCATCAGACAACCATCAGCCTTTCTCCCTCAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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