Basic Information
VIS ID
TVIS30013205
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
22858020/22856397 (Hg38)
End
22858020/22856397 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/341012; hsa-mir-1243/Downstream/1663795;
Nearest TSS
ENST00000502981/Upstream/340343; ENST00000503017/Downstream/141154;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/339972, chr4-CpG: 266/Downstream/1613680
Nearby gene
GBA3(No orient, 36825)
Upstream sequence
GTTCAAGAGAGATAGGATTACTTTCAAAGCACaataaaagggaatatagaggttctagaaactcataatcttgcagaattgggaaagccaaAAGATCTGA
Downstream sequence
AAGCAGCAACTAGCaaagcctgtcagtagataaaatgactcaggataaaatcacattaatggtgtggctaccacattcattgttccagatgatattaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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