Basic Information
VIS ID
TVIS30013207
Fusion event
HIV-STIM2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
26897300/26895678 (Hg38)
End
26897300/26895678 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
STIM2
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-1185-1-3p ; hsa-mir-1185-2-3p
Nearest miRNA
hsa-mir-12113/Upstream/2375388; hsa-mir-1243/Downstream/1923904;
Nearest TSS
ENST00000502981/Upstream/34219; ENST00000477474/Downstream/107322;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/34062, chr4-CpG: 55/Downstream/3382421
Upstream sequence
ACTTTTTTTTATGTTTTTGAATTTGTCCATAACCCAGTTTCATCAGTTTTAAGTCTCCATCTTGCACTGTCATTTATGAGAGCAAACTAGAGTTGCAGTC
Downstream sequence
CCAAACCATGGAACTTCTTTGTGTAGTTTGTTCTCATGAAACATTCAGCCAGAACAGGAGGGCCTAAGTTTCAGACAAATTTTAAATTAGTTTGGAAAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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