Basic Information
VIS ID
TVIS30013209
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
27056737/27055115 (Hg38)
End
27056737/27055115 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/2534825; hsa-mir-1243/Downstream/1764467;
Nearest TSS
ENST00000502981/Upstream/33833; ENST00000512873/Downstream/84936;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/193499, chr4-CpG: 55/Downstream/3222984
Nearby gene
STIM2(No orient, 29734)
Upstream sequence
TACTGGCTACCAACTCTGTTCCAAGTGCTTTATGTAGGTTGTTTCATTTCTTGTTCACAATGTTATCAGATGCAAGCGGTGAAACTCAGAAGTTAAGTCT
Downstream sequence
TTTACCGAGGGCTGTGTGGTCGCAGAGACGAGATTCAAACCAGTAAAATATAGCTTTGGAATATGATCGAGAGGATTTAGCAGGTGAAGGCAGATGGGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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