VISDB Viral Integration Site DataBase

VIS ID

TVIS30013215

Fusion event

HIV-ARAP2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

p14

Reference genome

Start

End

36136090/36134468 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-26b-5p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-4703-5p ; hsa-mir-6738-3p ; hsa-mir-544a ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-3144-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-582-5p ; hsa-mir-6847-3p ; hsa-mir-5186 ; hsa-mir-767-3p ; hsa-mir-4666a-3p ; hsa-mir-1255b-2-3p ; hsa-mir-338-5p ; hsa-mir-300 ; hsa-mir-381-3p ; hsa-mir-144-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-3682-5p ; hsa-mir-6883-3p ; hsa-mir-4699-3p ; hsa-mir-627-3p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-1305 ; hsa-mir-335-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p

Nearest miRNA

hsa-mir-12113/Upstream/7314800; hsa-mir-1243/Downstream/291898;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/5411248, chr4-CpG: 100/Downstream/109541

Upstream sequence

ACCCAACCACTGCCACATGTCTTCAGTCACAAAATTCTGTTGACTACAGTTTCCCAATGTATTCACTCTGTCTCCTCTCCTTTCCAAGACTGCCTTATTT

Downstream sequence

CAGATCTTCATGTTGTTCTTTCAGGTCACTACAGCCCCTCCTTACAGAATTCCTTTCCCAATTCTCAACCCCTGTAATGTCTACTCCTCACTATTGCCAG