Basic Information
VIS ID
TVIS30013216
Fusion event
HIV-MIR1273H integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
39339047/39337427 (Hg38)
End
39339047/39337427 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR1273H
Nearest miRNA
hsa-mir-12113/Upstream/469300; hsa-mir-1243/Downstream/74483;
Nearest TSS
ENST00000502981/Upstream/9670; ENST00000257408/Downstream/28908;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/154822, chr4-CpG: 48/Downstream/28601
Upstream sequence
cgcaccattgcactccagcctaggcaacaagagcgaaactccgtctcaaaaaaaaaaaaaagaaaaaGCAAGCTGTAGAAATTTTACAATAAGATGCTAC
Downstream sequence
TCAAATAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAACATTTACTTAGGtaatttaaaattattaatttaaatCTCTCATCTTCAAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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