Basic Information
VIS ID
TVIS30013222
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p12
Reference genome
GRCh37/hg19
Start
45720477/45718460 (Hg38)
End
45720477/45718460 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5216341; hsa-mir-1243/Downstream/1934209;
Nearest TSS
ENST00000502981/Upstream/708920; ENST00000502455/Downstream/405621;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/991758, chr4-CpG: 65/Downstream/671426
Nearby gene
GABRG1(No orient, 317310)
Upstream sequence
tgctggcataatgagttgatgtgggaatggtggcagagatgaaggtcatgtatcattccaacaatgtaggatcacattcagcacaactgatttaagtact
Downstream sequence
atttttactgagtgTTAGAGAGACAAATATGATCCAtgtattgcctacaccacctttccccaactgcagcagtgctgcatggcatggagacaatctgtgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate