Basic Information
VIS ID
TVIS30013229
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
57590235/56724069 (Hg38)
End
57590235/56724069 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4B
Nearest miRNA
hsa-mir-12113/Upstream/4011322; hsa-mir-1243/Downstream/4198550;
Nearest TSS
ENST00000502981/Upstream/42170; ENST00000503522/Downstream/87727;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/67532, chr4-CpG: 45/Downstream/97375
Nearby gene
HOPX(No orient, 42363)
Nearest cancer related gene
HOPX(TSG, No orient, 42363)
Upstream sequence
AATTattctaggattgagtaaataaagaaatatattgtggataatgaaagcaaggtatgacttagaggcagtgacgtgtacagctcagatcttaagtaca
Downstream sequence
cagcttgataactttttccatggacacttgggtaatcactacccaatcaatatTTTCAAGTGTTCAggtcaagtgtggtggttcatgcctgtaatcccag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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