Basic Information
VIS ID
TVIS30013230
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
65960770/65095052 (Hg38)
End
65960770/65095052 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4172368; hsa-mir-1243/Downstream/1181772;
Nearest TSS
ENST00000502981/Upstream/70567; ENST00000509473/Downstream/574883;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1745186, chr4-CpG: 32/Downstream/574423
Nearby gene
LINC02232(No orient, 90552)
Upstream sequence
GACAGTTCCTGCGAAGGAGGAAGCCAGTTAGTGGAGGTGGAGCAAAGAACTAGTGGGCAAAGGAGGTAGCCAGTTTGTGGAGGTGGAGCAAAGAAGTAGT
Downstream sequence
GAGAAGAGGAAGTTCTAAGAATGGTTGGGAggccgggtgtggtggctcactcccgtaatcccagaactttgggaagctgaggcgggcagatcacaaggtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate