Basic Information
VIS ID
TVIS30013235
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78564496/77643342 (Hg38)
End
78564496/77643342 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1067716; hsa-mir-1243/Downstream/5109995;
Nearest TSS
ENST00000502981/Upstream/37510; ENST00000515625/Downstream/88539;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/484904, chr4-CpG: 161/Downstream/175211
Nearby gene
CXCL13(No orient, 31508)
Upstream sequence
ATGAATGAATTAACATATCTAGACTTACTTTAAAATGTCAGTAATACTACAGAAATCCAAAAGTTGTTATGGAGTTCATGATTATATTGTTCAGAGCCAA
Downstream sequence
ATTAATGTTACAAGTTTTGATTTCAGTGACATCATCAAAGAAGGCTTCTCAAAGGCTCCAACATGTTTAGTATTTAAATTTAGTTACTACAGTATGTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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