VISDB Viral Integration Site DataBase

VIS ID

TVIS30013236

Fusion event

HIV-CNOT6L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

q21.1

Reference genome

Start

End

78727269/77806115 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-mir-186-5p ; hsa-mir-146a-5p ; hsa-mir-2054 ; hsa-mir-3942-3p ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-545-5p ; hsa-mir-205-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-561-3p ; hsa-mir-4796-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-20a-5p ; hsa-mir-526b-3p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-4716-3p ; hsa-mir-6780b-5p ; hsa-mir-4271 ; hsa-mir-4725-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-5585-5p ; hsa-mir-1252-5p ; hsa-mir-5681a ; hsa-mir-6783-5p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-6760-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-651-3p ; hsa-mir-5585-3p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1277-5p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4477b ; hsa-mir-3187-3p ; hsa-mir-155-3p ; hsa-mir-6794-3p ; hsa-mir-4529-5p ; hsa-mir-3185 ; hsa-mir-4720-3p ; hsa-mir-6837-3p ; hsa-mir-2392 ; hsa-mir-541-5p ; hsa-mir-1-5p ; hsa-mir-483-3p ; hsa-mir-646 ; hsa-mir-4668-5p ; hsa-mir-4290 ; hsa-mir-3613-3p ; hsa-mir-4687-5p

Nearest miRNA

hsa-mir-12113/Upstream/1230489; hsa-mir-1243/Downstream/4947222;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/647677, chr4-CpG: 161/Downstream/12438

Upstream sequence

CTCATAGTCAATCATTGACTTATCACTTTATATTTTAACTTTTTTTAAAAGGCCTCCTTCTTCCCAGTCCCATCTCCTCAACTGATGGTGAATACCTCAA

Downstream sequence

CTAGATTAATCTTAAAAAATTAACTTCAggccgggcacagtgactcacgcctataatcccagcactttgggaggctgaggccggcggatcacctgagatt