Basic Information
VIS ID
TVIS30013242
Fusion event
HIV-CCSER1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
92446229/91525078 (Hg38)
End
92446229/91525078 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4E
Target gene
CCSER1
miRNAs that regulate target gene
hsa-mir-544a
Nearest miRNA
hsa-mir-12113/Upstream/4224495; hsa-mir-1243/Downstream/7472309;
Nearest TSS
ENST00000502981/Upstream/199772; ENST00000505511/Downstream/362808;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/685962, chr4-CpG: 26/Downstream/657388
Upstream sequence
CATTAAGGCAGAAAAAAATAAGTGCAGAACCTGGAGAGTGGATCAAAAGAGAAAGAAGGAATGGGGAATTTTAAAAATGGTCTGTGCTAGAGATCTCTAA
Downstream sequence
CTAATACGAGAATCTCCACAGTGAGGGAGATTCTAGGGCTGGTGGAGAAGTTCCAGGTTTAAGATAGTTGAGGCTAATTGAAATATAATAAGAAATATAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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