Basic Information
VIS ID
TVIS30013245
Fusion event
HIV-TET2-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
106183443/105262286 (Hg38)
End
106183443/105262286 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
TET2-AS1
Nearest miRNA
hsa-mir-12113/Upstream/3931872; hsa-mir-1243/Downstream/4226412;
Nearest TSS
ENST00000502981/Upstream/84223; ENST00000265154/Downstream/137350;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/115475, chr4-CpG: 82/Downstream/211108
Upstream sequence
TTTTACTGCAAGTCTATAAGTATAAATGAGTATTCATAAGAATTTATAGACTTACAAATATTCACATAAAGCTATGCATATACTAACATTGTAAGTATAT
Downstream sequence
ATATTTCGGTCCAGATGTGTCAGATTTTGCTGATCTTCCTTTTTTGTTTGACCTTGACTTCATACACCAAGCAAAAACATTTTTTTTTTCTATTTTACAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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