Basic Information
VIS ID
TVIS30013252
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
138626262/137705108 (Hg38)
End
138626262/137705108 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/12197801; hsa-mir-1305/Downstream/5638352;
Nearest TSS
ENST00000502981/Upstream/49934; ENST00000506420/Downstream/29869;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/892520, chr4-CpG: 21/Downstream/855472
Nearby gene
PCDH18(No orient, 172610)
Upstream sequence
AAAAAATCAGCGAAGAATTTGAGACTTTAAAAAAAAGAAAAACAGAAATTTCTTTTGACTTGCTTAGATTTAAGATTGACTGCCTAAACAAGAAGAGAAC
Downstream sequence
ATTTCATTATTTCTCCATATTTTCCAACCTCTCTGTTAATAAAACTATGACCTTATACTTCTGAGATGGTAACTACTTCAGAACTATTAATTGCTTTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate