Basic Information
VIS ID
TVIS30013254
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
139635076/138713922 (Hg38)
End
139635076/138713922 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/13206615; hsa-mir-1305/Downstream/4629538;
Nearest TSS
ENST00000502981/Upstream/48353; ENST00000513400/Downstream/59628;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/151821, chr4-CpG: 112/Downstream/301367
Nearby gene
LINC00499(No orient, 289578)
Upstream sequence
CACAGcagcactgttgacatgtttggctggataatgacttgtggatgctcctatgcactgtaggatgtttcgcagcatcctgctttctacctaccagata
Downstream sequence
tcagtagctacctaccagatatcactacctacccccccaccactgcccactcaactgtagccatcaaaaatgtctcagacactgtcaaacatccactgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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