Basic Information
VIS ID
TVIS30013258
Fusion event
HIV-INPP4B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
GRCh37/hg19
Start
143159992/142238839 (Hg38)
End
143159992/142238839 (Hg38)
Orient
-
Location type
Intronic
Target gene
INPP4B
miRNAs that regulate target gene
hsa-mir-222-3p ; hsa-mir-181a-5p ; hsa-mir-765
Nearest miRNA
hsa-mir-12113/Upstream/16731532; hsa-mir-1305/Downstream/1104621;
Nearest TSS
ENST00000502981/Upstream/517057; ENST00000514766/Downstream/66993;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/601669, chr4-CpG: 111/Downstream/606948
Nearest cancer related gene
INPP4B(TSG, No orient, 0)
Upstream sequence
AAAAAACTTCAGAAAAAGCATATAGGATTAGATATTATGATAACATTTGATACTTATTAGTGAAGCCAGTACTCATACCACACTTTCAAGTCATCAGGGG
Downstream sequence
AGAATTTCATTTCCATTGCTCTTCAGCAATGAATGCCTATGTCACACTTACACACCAAAGCTTAGTGGGCAACAAAATATCAAGTCAGTCACCAGTCAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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