Basic Information
VIS ID
TVIS30013260
Fusion event
HIV-LOC105377465 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
GRCh37/hg19
Start
146121164/145200012 (Hg38)
End
146121164/145200012 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377465
Nearest miRNA
hsa-mir-12113/Upstream/1856477; hsa-mir-1305/Downstream/1208571;
Nearest TSS
ENST00000502981/Upstream/19851; ENST00000514168/Downstream/140409;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/19109, chr4-CpG: 155/Downstream/281375
Nearby gene
OTUD4(No orient, 20332)
Upstream sequence
cagatatgcatttctctcaggtgagcagagggatgagcttctgctcacatctgtgaagataagcgatcaggatgaacttcaacagaactgttttagggta
Downstream sequence
aagatcttgaggcccacaaggaatttccttgtgggcaaattgtgagggaggtatgtagctttgtaggtattttatttagaaataaaatgggaggcaggtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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