Basic Information
VIS ID
TVIS30013266
Fusion event
HIV-LOC107986195 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
149758502/148837350 (Hg38)
End
149758502/148837350 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986195
Nearest miRNA
hsa-mir-12113/Upstream/1054682; hsa-mir-1305/Downstream/3651977;
Nearest TSS
ENST00000502981/Upstream/144318; ENST00000503100/Downstream/225172;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/391446, chr4-CpG: 161/Downstream/1240748
Upstream sequence
AGTTTAGCTCATTGTTAAGATGTAAACACCATGCGAATTAATACTTTAAGTTTTACCAACAGCCACCCTTTGATGTGAATGGACTTATCAGAGATCTTTT
Downstream sequence
TAGTGGGATTTGATTGGGAAAAAGTGAAAGAGACAAGTTTAAGGTACTGGAATTCTGGGGCCTGAGGGATTAGGGAATATATGGAGGCATGATGAAAAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate