Basic Information
VIS ID
TVIS30013270
Fusion event
HIV-LRBA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
151840408/150919256 (Hg38)
End
151840408/150919256 (Hg38)
Orient
+
Location type
Intronic
Target gene
LRBA
miRNAs that regulate target gene
hsa-mir-1229-3p ; hsa-mir-93-3p ; hsa-mir-769-5p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-12113/Upstream/3136588; hsa-mir-1305/Downstream/1570071;
Nearest TSS
ENST00000502981/Upstream/69719; ENST00000503002/Downstream/96011;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/335323, chr4-CpG: 89/Downstream/96245
Upstream sequence
accagatgttgtatgattccactaatatgaatggtccagaatagggctggggaatatggggagtggctgctaatcagtatggggtttcttttgggtgtga
Downstream sequence
tgagaatgtcccaaaattgactgtggtgatggttgacaactctgtgaacacatttacctactatactatatactttaaatgagttaattgtgtggtatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate