VISDB Viral Integration Site DataBase

VIS ID

TVIS30013286

Fusion event

HIV-MARCH6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

p15.2

Reference genome

Start

End

10383231/10383119 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-25-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-190a-3p ; hsa-mir-101-5p ; hsa-mir-6502-5p ; hsa-mir-1277-5p ; hsa-mir-1301-5p ; hsa-mir-520f-5p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-5011-5p ; hsa-mir-5187-3p ; hsa-mir-345-3p ; hsa-mir-888-5p ; hsa-mir-562 ; hsa-mir-6732-3p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-889-3p ; hsa-mir-549a ; hsa-mir-708-3p ; hsa-mir-28-3p ; hsa-mir-202-5p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-29a-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-920 ; hsa-mir-5591-5p ; hsa-mir-6726-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-7154-3p ; hsa-mir-6814-5p ; hsa-mir-383-3p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3120-5p ; hsa-mir-3187-5p ; hsa-mir-3664-5p ; hsa-mir-4432 ; hsa-mir-4522 ; hsa-mir-4793-3p ; hsa-mir-4797-5p ; hsa-mir-499a-5p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-6510-3p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6860 ; hsa-mir-6888-3p ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-8087 ; hsa-mir-939-3p ; hsa-mir-3135a

Nearest miRNA

hsa-mir-4277/Upstream/1329224; hsa-mir-10397/Downstream/19245;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/28719, chr5-CpG: 97/Downstream/58374

Upstream sequence

GCAGAGTATATAGATAAGATTCATTAGAGTTAAACTAAATGTTTAATTAGTATAATTGATATCTTCATGTCTCCTTAAAATATGATAAAATAATCTTGAT

Downstream sequence

TACCTATGGaaatgaaattcttggaagataccaactagcagaatataggtactgttgaagagtgagttagctagaaaatgtatcaaggaattctcccagg