Basic Information
VIS ID
TVIS30013288
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
12175754/12175642 (Hg38)
End
12175754/12175642 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/1697497; hsa-mir-103a-1/Downstream/2650287;
Nearest TSS
ENST00000502646/Upstream/271599; ENST00000505877/Downstream/398995;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/271051, chr5-CpG: 46/Downstream/619218
Nearby gene
CTNND2(No orient, 271599)
Nearest cancer related gene
CTNND2(OG, No orient, 271599)
Upstream sequence
CTCTCATTGCAGGATATTTACTAGGCCTGGAACTTCTACAAACTCCAAACTCCATGACCTGAAATACTAAGTAACAATGGCAACTGCCCCCCATCACCAC
Downstream sequence
AATTTCATTAACAAGCAAAAATATTGCCCCCTCACCTCCCACCCCTCATTCACATATGCTTAGGAGCCTGGCTTTTCTCCTGATTGAAACTATTTACATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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