Basic Information
VIS ID
TVIS30013297
Fusion event
HIV-LOC105374724 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
35839901/35839799 (Hg38)
End
35839901/35839799 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
LOC105374724
Nearest miRNA
hsa-mir-10397/Upstream/3445324; hsa-mir-103a-1/Downstream/308093;
Nearest TSS
ENST00000502646/Upstream/12781; ENST00000515665/Downstream/12896;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/221562, chr5-CpG: 85/Downstream/311596
Nearby gene
IL7R(No orient, 17076)
Upstream sequence
ttccataaactttttatgaccttttaccattttctactaaagagcagatcaagactccaagaaaaccttgttactctgacacacaggcctagatgctggc
Downstream sequence
ctcgcaccagcgtgcttttgatattaatgtttaatttatagaaaaactctgaactaatcgtatgcctcaaaattggcccttacagtctcatgtgcccatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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