Basic Information
VIS ID
TVIS30013300
Fusion event
HIV-RICTOR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
End
39026296/39026194 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/468633; hsa-mir-103a-1/Downstream/14925310;
Upstream sequence
ACAGCACTACGTGAAAAGTATCAGGTCAGAAATAAGATGATATTCTCTGAAGCCTTAAAGTTTAGAAAACCATGGCTGTATGAGAGAAAAAAGGaaaaaa
Downstream sequence
taaccagacacagttgctcacacctgtagtcccatctactcgggaggctgaggtgggaggactgcttgagcccaggaggttaaggctgcagtgggcagtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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