Basic Information
VIS ID
TVIS30013302
Fusion event
HIV-LOC105374737 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
40614173/40614071 (Hg38)
End
40614173/40614071 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
LOC105374737
Nearest miRNA
hsa-mir-10397/Upstream/2056510; hsa-mir-103a-1/Downstream/13337433;
Nearest TSS
ENST00000502646/Upstream/198934; ENST00000514343/Downstream/65427;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/892338, chr5-CpG: 191/Downstream/65329
Nearby gene
PTGER4(No orient, 65859)
Upstream sequence
CCAGCTTTGGACCTGCTCTAATGATGCAGAAATAGCATGTGATTTAATTAAGATACTTACCTAACCACAAGATTAGAGCTCTTAACAGTAATCAGAGAGG
Downstream sequence
TGGGTCAACATTTGATGTTTCTAGGAAATAATTTCTATTGCTTCATCTCTTCTCTCATATAATTTTATTAGAAATGTAATAGAAAAGAACACATATTGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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